Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Gm45751-201ENSMUST00000210185 1573 ntBASIC12.25□□□□□ -0.45
Cdh11P55288 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Cdh11P55288 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Cdh11P55288 AC154725.1-201ENSMUST00000224826 1961 ntBASIC12.25□□□□□ -0.45
Cdh11P55288 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC12.25□□□□□ -0.45
Cdh11P55288 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Cdh11P55288 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Cdh11P55288 Mypopos-202ENSMUST00000205975 2321 ntBASIC12.25□□□□□ -0.45
Cdh11P55288 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Cdh11P55288 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Cdh11P55288 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Cdh11P55288 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
Cdh11P55288 Gm10327-201ENSMUST00000105222 1002 ntBASIC12.24□□□□□ -0.45
Cdh11P55288 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Cdh11P55288 Gm7488-201ENSMUST00000117148 684 ntBASIC12.24□□□□□ -0.45
Cdh11P55288 Gm15957-201ENSMUST00000118893 974 ntBASIC12.24□□□□□ -0.45
Cdh11P55288 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Gm13730-201ENSMUST00000121036 1462 ntBASIC12.24□□□□□ -0.45
Cdh11P55288 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Cdh11P55288 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
Cdh11P55288 Gm24694-201ENSMUST00000180054 110 ntBASIC12.24□□□□□ -0.45
Cdh11P55288 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Gm27663-201ENSMUST00000184839 110 ntBASIC12.24□□□□□ -0.45
Cdh11P55288 Gm5069-202ENSMUST00000192714 1011 ntBASIC12.24□□□□□ -0.45
Cdh11P55288 Gm43703-201ENSMUST00000200523 763 ntBASIC12.24□□□□□ -0.45
Cdh11P55288 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC12.24□□□□□ -0.45
Cdh11P55288 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Cdh11P55288 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.24□□□□□ -0.45
Cdh11P55288 Gm9229-201ENSMUST00000222777 126 ntBASIC12.24□□□□□ -0.45
Cdh11P55288 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Cdh11P55288 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdh11P55288 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Cdh11P55288 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Gm45242-201ENSMUST00000210666 2129 ntBASIC12.23□□□□□ -0.45
Cdh11P55288 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC12.23□□□□□ -0.45
Cdh11P55288 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.23□□□□□ -0.45
Cdh11P55288 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Cdh11P55288 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Cdh11P55288 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC12.23□□□□□ -0.45
Cdh11P55288 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.23□□□□□ -0.45
Cdh11P55288 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.23□□□□□ -0.45
Cdh11P55288 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Cdh11P55288 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.23□□□□□ -0.45
Cdh11P55288 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Gm20445-201ENSMUST00000061905 565 ntBASIC12.23□□□□□ -0.45
Cdh11P55288 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
Cdh11P55288 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdh11P55288 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Cdh11P55288 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Cdh11P55288 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms