Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Gm38355-201ENSMUST00000192514 1570 ntBASIC11.07□□□□□ -0.64
Hmgb3O54879 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Arhgef10-202ENSMUST00000110800 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 CT025626.1-201ENSMUST00000223735 1455 ntBASIC11.07□□□□□ -0.64
Hmgb3O54879 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Mypopos-202ENSMUST00000205975 2321 ntBASIC11.07□□□□□ -0.64
Hmgb3O54879 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC11.07□□□□□ -0.64
Hmgb3O54879 Pcdhga7-201ENSMUST00000192511 4730 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC11.07□□□□□ -0.64
Hmgb3O54879 Zkscan14-203ENSMUST00000198959 2243 ntBASIC11.07□□□□□ -0.64
Hmgb3O54879 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Hmgb3O54879 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Hmgb3O54879 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC11.07□□□□□ -0.64
Hmgb3O54879 Umpk-ps-201ENSMUST00000211897 827 ntBASIC11.07□□□□□ -0.64
Hmgb3O54879 AC161829.1-201ENSMUST00000220298 281 ntBASIC11.07□□□□□ -0.64
Hmgb3O54879 AC121598.1-201ENSMUST00000228224 1019 ntBASIC11.07□□□□□ -0.64
Hmgb3O54879 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Gm7461-201ENSMUST00000058918 827 ntBASIC11.07□□□□□ -0.64
Hmgb3O54879 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Hmgb3O54879 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.07□□□□□ -0.64
Hmgb3O54879 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Hmgb3O54879 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC11.07□□□□□ -0.64
Hmgb3O54879 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hmgb3O54879 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Hmgb3O54879 Pdgfrb-201ENSMUST00000025522 5407 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Fn1-203ENSMUST00000186129 7797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Spen-202ENSMUST00000105786 12299 ntAPPRIS P3 TSL 5 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC11.06□□□□□ -0.64
Hmgb3O54879 CT025555.1-201ENSMUST00000225901 1217 ntBASIC11.06□□□□□ -0.64
Hmgb3O54879 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Frmpd3-203ENSMUST00000208130 7314 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Hmgb3O54879 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC11.06□□□□□ -0.64
Hmgb3O54879 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 149.4 ms