Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Gm8337-201ENSMUST00000187358 1938 ntBASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Gm12859-201ENSMUST00000117834 427 ntBASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Rubie-203ENSMUST00000227803 2430 ntBASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC12.66□□□□□ -0.38
Trim3Q9R1R2 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Gm28760-201ENSMUST00000185995 736 ntBASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Gm6473-201ENSMUST00000188572 1210 ntBASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Gtpbp10-211ENSMUST00000198799 648 ntBASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 AC149294.4-201ENSMUST00000227870 882 ntBASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim3Q9R1R2 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.39
Trim3Q9R1R2 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms