Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm37133-201ENSMUST00000192705 1922 ntBASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Gm12846-201ENSMUST00000120431 1373 ntBASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Gm38319-201ENSMUST00000194537 1266 ntBASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sf3b1Q99NB9 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Gm30238-201ENSMUST00000195528 2603 ntBASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Gm27572-201ENSMUST00000183702 255 ntBASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Mir6420-201ENSMUST00000185032 102 ntBASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Gm37922-201ENSMUST00000195596 455 ntBASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sf3b1Q99NB9 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sf3b1Q99NB9 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Sf3b1Q99NB9 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sf3b1Q99NB9 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Sf3b1Q99NB9 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sf3b1Q99NB9 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
Sf3b1Q99NB9 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Gm5187-201ENSMUST00000117317 991 ntBASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Gm44974-201ENSMUST00000206387 1279 ntBASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 AC173210.1-201ENSMUST00000222341 1131 ntBASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms