Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col3a1P08121 Morn2-202ENSMUST00000227729 656 ntBASIC15.83■□□□□ 0.12
Col3a1P08121 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC15.83■□□□□ 0.12
Col3a1P08121 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col3a1P08121 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col3a1P08121 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col3a1P08121 Gm44775-201ENSMUST00000207266 1456 ntBASIC15.83■□□□□ 0.12
Col3a1P08121 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col3a1P08121 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col3a1P08121 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Col3a1P08121 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC15.82■□□□□ 0.12
Col3a1P08121 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Col3a1P08121 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Gm15370-201ENSMUST00000117158 253 ntBASIC15.82■□□□□ 0.12
Col3a1P08121 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC15.82■□□□□ 0.12
Col3a1P08121 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC15.82■□□□□ 0.12
Col3a1P08121 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col3a1P08121 AC139054.1-201ENSMUST00000226898 1598 ntBASIC15.81■□□□□ 0.12
Col3a1P08121 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC15.81■□□□□ 0.12
Col3a1P08121 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Col3a1P08121 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Col3a1P08121 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC15.81■□□□□ 0.12
Col3a1P08121 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC15.81■□□□□ 0.12
Col3a1P08121 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC15.81■□□□□ 0.12
Col3a1P08121 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC15.81■□□□□ 0.12
Col3a1P08121 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC15.81■□□□□ 0.12
Col3a1P08121 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC15.81■□□□□ 0.12
Col3a1P08121 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Col3a1P08121 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
Col3a1P08121 Gm8228-201ENSMUST00000189949 2192 ntBASIC15.81■□□□□ 0.12
Col3a1P08121 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Col3a1P08121 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC15.81■□□□□ 0.12
Col3a1P08121 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
Col3a1P08121 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Gm7993-201ENSMUST00000200970 1384 ntBASIC15.81■□□□□ 0.12
Col3a1P08121 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC15.81■□□□□ 0.12
Col3a1P08121 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC15.81■□□□□ 0.12
Col3a1P08121 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col3a1P08121 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Col3a1P08121 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Col3a1P08121 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC15.8■□□□□ 0.12
Col3a1P08121 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Col3a1P08121 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Gm24255-201ENSMUST00000104481 128 ntBASIC15.8■□□□□ 0.12
Col3a1P08121 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC15.8■□□□□ 0.12
Col3a1P08121 Gm8738-201ENSMUST00000172606 329 ntBASIC15.8■□□□□ 0.12
Col3a1P08121 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC15.8■□□□□ 0.12
Col3a1P08121 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Col3a1P08121 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
Col3a1P08121 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Col3a1P08121 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Gm38157-201ENSMUST00000194178 1698 ntBASIC15.8■□□□□ 0.12
Col3a1P08121 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms