Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Gm16476-201ENSMUST00000221544 139 ntBASIC13.31□□□□□ -0.28
Lima1Q9ERG0 AC090659.2-201ENSMUST00000225378 1186 ntBASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lima1Q9ERG0 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Gm5385-201ENSMUST00000118988 1559 ntBASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Gm14701-201ENSMUST00000117156 348 ntBASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Gm12428-201ENSMUST00000119844 727 ntBASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Dupd1-202ENSMUST00000224735 548 ntBASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Gm44241-201ENSMUST00000203230 1662 ntBASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lima1Q9ERG0 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Gm24543-201ENSMUST00000103867 82 ntBASIC13.29□□□□□ -0.28
Lima1Q9ERG0 AA543401-201ENSMUST00000164248 1269 ntBASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Lima1Q9ERG0 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Gm4782-201ENSMUST00000168705 2046 ntBASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lima1Q9ERG0 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 73.8 ms