Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Shmt1P50431 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Shmt1P50431 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC14.22□□□□□ -0.13
Shmt1P50431 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Shmt1P50431 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC14.22□□□□□ -0.13
Shmt1P50431 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Shmt1P50431 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Shmt1P50431 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Shmt1P50431 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC14.22□□□□□ -0.13
Shmt1P50431 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Shmt1P50431 Gm44799-201ENSMUST00000207639 1202 ntBASIC14.22□□□□□ -0.13
Shmt1P50431 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Shmt1P50431 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Shmt1P50431 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC14.21□□□□□ -0.13
Shmt1P50431 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC14.21□□□□□ -0.13
Shmt1P50431 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Shmt1P50431 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC14.21□□□□□ -0.13
Shmt1P50431 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC14.21□□□□□ -0.13
Shmt1P50431 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC14.21□□□□□ -0.13
Shmt1P50431 AC153962.4-201ENSMUST00000217878 242 ntBASIC14.21□□□□□ -0.13
Shmt1P50431 Gm17794-201ENSMUST00000220252 955 ntBASIC14.21□□□□□ -0.13
Shmt1P50431 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Itm2b-204ENSMUST00000228637 783 ntBASIC14.21□□□□□ -0.13
Shmt1P50431 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shmt1P50431 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Shmt1P50431 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Shmt1P50431 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Shmt1P50431 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Shmt1P50431 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Shmt1P50431 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Shmt1P50431 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Shmt1P50431 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Shmt1P50431 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC14.2□□□□□ -0.14
Shmt1P50431 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC14.2□□□□□ -0.14
Shmt1P50431 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.2□□□□□ -0.14
Shmt1P50431 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 AC154725.1-201ENSMUST00000224826 1961 ntBASIC14.2□□□□□ -0.14
Shmt1P50431 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
Shmt1P50431 Tmed9-203ENSMUST00000224741 1450 ntBASIC14.2□□□□□ -0.14
Shmt1P50431 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Shmt1P50431 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Gm11803-201ENSMUST00000119966 444 ntBASIC14.2□□□□□ -0.14
Shmt1P50431 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.2□□□□□ -0.14
Shmt1P50431 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC14.2□□□□□ -0.14
Shmt1P50431 Proscos-202ENSMUST00000178990 666 ntBASIC14.2□□□□□ -0.14
Shmt1P50431 Gm7561-201ENSMUST00000211203 886 ntBASIC14.2□□□□□ -0.14
Shmt1P50431 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC14.2□□□□□ -0.14
Shmt1P50431 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Shmt1P50431 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shmt1P50431 Gm43399-201ENSMUST00000202546 2374 ntBASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms