Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Msx1P13297 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Msx1P13297 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Msx1P13297 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC12.85□□□□□ -0.35
Msx1P13297 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Msx1P13297 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 AC159196.2-201ENSMUST00000224082 1622 ntBASIC12.84□□□□□ -0.35
Msx1P13297 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC12.84□□□□□ -0.35
Msx1P13297 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Gm38577-201ENSMUST00000221531 4545 ntBASIC12.84□□□□□ -0.35
Msx1P13297 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Msx1P13297 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC12.84□□□□□ -0.35
Msx1P13297 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC12.84□□□□□ -0.35
Msx1P13297 Gm11814-201ENSMUST00000119515 929 ntBASIC12.84□□□□□ -0.35
Msx1P13297 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.84□□□□□ -0.35
Msx1P13297 Gm2495-201ENSMUST00000191160 466 ntBASIC12.84□□□□□ -0.35
Msx1P13297 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12.84□□□□□ -0.35
Msx1P13297 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC12.84□□□□□ -0.35
Msx1P13297 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC12.84□□□□□ -0.35
Msx1P13297 Gm8399-201ENSMUST00000082300 1117 ntBASIC12.84□□□□□ -0.35
Msx1P13297 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC12.84□□□□□ -0.35
Msx1P13297 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Msx1P13297 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
Msx1P13297 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Msx1P13297 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Gm11661-201ENSMUST00000121761 1327 ntBASIC12.84□□□□□ -0.35
Msx1P13297 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Msx1P13297 Mndal-202ENSMUST00000186442 1646 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Msx1P13297 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Msx1P13297 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC12.84□□□□□ -0.35
Msx1P13297 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
Msx1P13297 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
Msx1P13297 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Msx1P13297 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Msx1P13297 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Msx1P13297 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC12.83□□□□□ -0.35
Msx1P13297 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Msx1P13297 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Msx1P13297 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.83□□□□□ -0.35
Msx1P13297 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Msx1P13297 Gm42769-201ENSMUST00000198576 1659 ntBASIC12.83□□□□□ -0.35
Msx1P13297 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.83□□□□□ -0.35
Msx1P13297 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.83□□□□□ -0.35
Msx1P13297 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC12.83□□□□□ -0.36
Msx1P13297 Gm42853-201ENSMUST00000201273 1387 ntBASIC12.83□□□□□ -0.36
Msx1P13297 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC12.83□□□□□ -0.36
Msx1P13297 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Msx1P13297 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Msx1P13297 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.83□□□□□ -0.36
Msx1P13297 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC12.83□□□□□ -0.36
Msx1P13297 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC12.83□□□□□ -0.36
Msx1P13297 Ndufc1-201ENSMUST00000038108 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Msx1P13297 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Msx1P13297 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Msx1P13297 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Msx1P13297 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Msx1P13297 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Msx1P13297 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Msx1P13297 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Msx1P13297 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Msx1P13297 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Msx1P13297 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Msx1P13297 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 11.2 ms