Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
ClppO88696 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
ClppO88696 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
ClppO88696 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
ClppO88696 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
ClppO88696 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
ClppO88696 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
ClppO88696 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 AC114543.1-201ENSMUST00000226451 1558 ntBASIC13.2□□□□□ -0.3
ClppO88696 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
ClppO88696 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
ClppO88696 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
ClppO88696 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
ClppO88696 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC13.2□□□□□ -0.3
ClppO88696 Gm12960-201ENSMUST00000120017 1066 ntBASIC13.2□□□□□ -0.3
ClppO88696 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC13.2□□□□□ -0.3
ClppO88696 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC13.2□□□□□ -0.3
ClppO88696 Gm17150-201ENSMUST00000165577 381 ntBASIC13.2□□□□□ -0.3
ClppO88696 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC13.2□□□□□ -0.3
ClppO88696 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC13.2□□□□□ -0.3
ClppO88696 CT025678.1-201ENSMUST00000214795 2972 ntBASIC13.2□□□□□ -0.3
ClppO88696 CT030657.3-201ENSMUST00000222707 1200 ntBASIC13.2□□□□□ -0.3
ClppO88696 Cdk7-205ENSMUST00000225990 1159 ntBASIC13.2□□□□□ -0.3
ClppO88696 AC125117.1-201ENSMUST00000228121 468 ntBASIC13.2□□□□□ -0.3
ClppO88696 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Gm25857-201ENSMUST00000082788 129 ntBASIC13.2□□□□□ -0.3
ClppO88696 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
ClppO88696 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ClppO88696 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
ClppO88696 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ClppO88696 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ClppO88696 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
ClppO88696 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Gm8602-201ENSMUST00000184045 607 ntBASIC13.19□□□□□ -0.3
ClppO88696 Gm38114-201ENSMUST00000191877 1232 ntBASIC13.19□□□□□ -0.3
ClppO88696 AC156560.2-201ENSMUST00000221232 264 ntBASIC13.19□□□□□ -0.3
ClppO88696 AC150560.1-201ENSMUST00000227731 1187 ntBASIC13.19□□□□□ -0.3
ClppO88696 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC13.19□□□□□ -0.3
ClppO88696 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ClppO88696 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ClppO88696 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
ClppO88696 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
ClppO88696 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ClppO88696 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ClppO88696 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
ClppO88696 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ClppO88696 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC13.18□□□□□ -0.3
ClppO88696 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
ClppO88696 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ClppO88696 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ClppO88696 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ClppO88696 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
ClppO88696 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ClppO88696 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
ClppO88696 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ClppO88696 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC13.18□□□□□ -0.3
ClppO88696 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
ClppO88696 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms