Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Gm10305-201ENSMUST00000195331 2475 ntBASIC13.04□□□□□ -0.32
Tnfsf4P43488 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Tnfsf4P43488 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Gm2756-201ENSMUST00000195851 400 ntBASIC13.03□□□□□ -0.32
Tnfsf4P43488 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Tnfsf4P43488 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Tnfsf4P43488 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Gm15770-201ENSMUST00000117498 584 ntBASIC13.02□□□□□ -0.33
Tnfsf4P43488 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Gm2213-201ENSMUST00000197485 688 ntBASIC13.02□□□□□ -0.33
Tnfsf4P43488 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Gm3695-201ENSMUST00000087222 1009 ntBASIC13.02□□□□□ -0.33
Tnfsf4P43488 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Gm5320-201ENSMUST00000207163 1519 ntBASIC13.02□□□□□ -0.33
Tnfsf4P43488 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Syt7-205ENSMUST00000224135 1557 ntBASIC13.02□□□□□ -0.33
Tnfsf4P43488 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Tnfsf4P43488 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Tnfsf4P43488 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Tnfsf4P43488 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Tnfsf4P43488 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Tnfsf4P43488 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC13.01□□□□□ -0.33
Tnfsf4P43488 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms