Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm24830-201ENSMUST00000102024 166 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm25890-201ENSMUST00000177643 165 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Rnu1b2-201ENSMUST00000178073 165 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Rnu1b1-201ENSMUST00000178250 165 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm22614-201ENSMUST00000178300 165 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm22042-201ENSMUST00000082989 165 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm26232-201ENSMUST00000083360 166 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm24136-201ENSMUST00000083374 165 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Rnu1b6-201ENSMUST00000083839 166 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm26110-201ENSMUST00000083971 165 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm7899-201ENSMUST00000192935 1897 ntBASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ddx55Q6ZPL9 Gm15897-201ENSMUST00000117770 1486 ntBASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Gm12715-201ENSMUST00000121430 1128 ntBASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Gm30285-201ENSMUST00000214614 422 ntBASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ddx55Q6ZPL9 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx55Q6ZPL9 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx55Q6ZPL9 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx55Q6ZPL9 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx55Q6ZPL9 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC15.27■□□□□ 0.03
Ddx55Q6ZPL9 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Ddx55Q6ZPL9 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx55Q6ZPL9 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx55Q6ZPL9 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ddx55Q6ZPL9 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Gm10434-201ENSMUST00000101158 471 ntBASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Gm11978-201ENSMUST00000122315 466 ntBASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Gm45186-201ENSMUST00000206874 478 ntBASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Gm32025-201ENSMUST00000217960 307 ntBASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ddx55Q6ZPL9 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms