Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim40Q3UWA4 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim40Q3UWA4 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 AC149294.4-201ENSMUST00000227870 882 ntBASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
Trim40Q3UWA4 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Trim40Q3UWA4 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Trim40Q3UWA4 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.65□□□□□ -0.39
Trim40Q3UWA4 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.64□□□□□ -0.39
Trim40Q3UWA4 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Gm12260-201ENSMUST00000122447 411 ntBASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Gm12017-201ENSMUST00000122453 1003 ntBASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim40Q3UWA4 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.63□□□□□ -0.39
Trim40Q3UWA4 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Pck2-205ENSMUST00000226352 2784 ntBASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Mir3113-201ENSMUST00000175478 76 ntBASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Gpr146-202ENSMUST00000053120 1040 ntBASIC12.63□□□□□ -0.39
Trim40Q3UWA4 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim40Q3UWA4 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.63□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms