Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Zkscan14-203ENSMUST00000198959 2243 ntBASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lima1Q9ERG0 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Gm10253-201ENSMUST00000194270 940 ntBASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 AC149588.3-201ENSMUST00000227515 150 ntBASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lima1Q9ERG0 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Gm9719-201ENSMUST00000162765 543 ntBASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Gm45453-201ENSMUST00000211758 853 ntBASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lima1Q9ERG0 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Mir449b-201ENSMUST00000104833 80 ntBASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Gm15693-201ENSMUST00000120470 637 ntBASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Gm26308-201ENSMUST00000157768 69 ntBASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Gm5779-201ENSMUST00000218467 910 ntBASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Gm45751-201ENSMUST00000210185 1573 ntBASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms