Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 AC126549.2-201ENSMUST00000223997 1976 ntBASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 AC115735.4-201ENSMUST00000227460 1944 ntBASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC12.72□□□□□ -0.37
Ddx28Q9CWT6 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Gm5566-201ENSMUST00000116118 459 ntBASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Gm27631-201ENSMUST00000184163 466 ntBASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Gm45751-201ENSMUST00000210185 1573 ntBASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Gm7002-201ENSMUST00000221386 2165 ntBASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Ddx28Q9CWT6 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Gm7049-201ENSMUST00000223520 1712 ntBASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC12.71□□□□□ -0.38
Ddx28Q9CWT6 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Gm9719-201ENSMUST00000162765 543 ntBASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Gm24158-201ENSMUST00000175263 71 ntBASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Gm10253-201ENSMUST00000194270 940 ntBASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms