Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC12.28□□□□□ -0.44
Usf1Q61069 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC12.28□□□□□ -0.44
Usf1Q61069 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC12.28□□□□□ -0.44
Usf1Q61069 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Gm21769-201ENSMUST00000211922 111 ntBASIC12.28□□□□□ -0.44
Usf1Q61069 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Usf1Q61069 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Gm8337-201ENSMUST00000187358 1938 ntBASIC12.28□□□□□ -0.44
Usf1Q61069 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Abhd6-203ENSMUST00000225234 1958 ntBASIC12.28□□□□□ -0.44
Usf1Q61069 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC12.28□□□□□ -0.44
Usf1Q61069 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Gm3756-201ENSMUST00000169182 1355 ntBASIC12.28□□□□□ -0.44
Usf1Q61069 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.28□□□□□ -0.44
Usf1Q61069 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.27□□□□□ -0.44
Usf1Q61069 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Gm37411-201ENSMUST00000194180 2282 ntBASIC12.27□□□□□ -0.44
Usf1Q61069 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.44
Usf1Q61069 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC12.27□□□□□ -0.44
Usf1Q61069 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usf1Q61069 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC12.27□□□□□ -0.45
Usf1Q61069 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC12.27□□□□□ -0.45
Usf1Q61069 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC12.27□□□□□ -0.45
Usf1Q61069 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC12.27□□□□□ -0.45
Usf1Q61069 Gm7809-201ENSMUST00000153199 742 ntBASIC12.27□□□□□ -0.45
Usf1Q61069 Gm8584-201ENSMUST00000171982 758 ntBASIC12.27□□□□□ -0.45
Usf1Q61069 Gm43138-201ENSMUST00000199123 708 ntBASIC12.27□□□□□ -0.45
Usf1Q61069 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC12.27□□□□□ -0.45
Usf1Q61069 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC12.27□□□□□ -0.45
Usf1Q61069 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC12.27□□□□□ -0.45
Usf1Q61069 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Usf1Q61069 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usf1Q61069 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Usf1Q61069 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Usf1Q61069 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usf1Q61069 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Usf1Q61069 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC12.26□□□□□ -0.45
Usf1Q61069 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usf1Q61069 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usf1Q61069 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usf1Q61069 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms