Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
ClpbQ60649 Gm14452-201ENSMUST00000118680 1632 ntBASIC13.02□□□□□ -0.33
ClpbQ60649 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ClpbQ60649 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ClpbQ60649 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ClpbQ60649 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
ClpbQ60649 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
ClpbQ60649 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
ClpbQ60649 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
ClpbQ60649 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
ClpbQ60649 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Rubie-203ENSMUST00000227803 2430 ntBASIC13.01□□□□□ -0.33
ClpbQ60649 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
ClpbQ60649 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
ClpbQ60649 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
ClpbQ60649 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC13.01□□□□□ -0.33
ClpbQ60649 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
ClpbQ60649 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
ClpbQ60649 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Gm44065-201ENSMUST00000203184 3527 ntBASIC13.01□□□□□ -0.33
ClpbQ60649 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
ClpbQ60649 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC13.01□□□□□ -0.33
ClpbQ60649 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
ClpbQ60649 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC13.01□□□□□ -0.33
ClpbQ60649 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Gm14371-201ENSMUST00000138925 1518 ntBASIC13.01□□□□□ -0.33
ClpbQ60649 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC13.01□□□□□ -0.33
ClpbQ60649 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC13.01□□□□□ -0.33
ClpbQ60649 Gm45003-201ENSMUST00000205875 2158 ntBASIC13.01□□□□□ -0.33
ClpbQ60649 Mypopos-202ENSMUST00000205975 2321 ntBASIC13.01□□□□□ -0.33
ClpbQ60649 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
ClpbQ60649 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC13□□□□□ -0.33
ClpbQ60649 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC13□□□□□ -0.33
ClpbQ60649 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 AC159196.2-201ENSMUST00000224082 1622 ntBASIC13□□□□□ -0.33
ClpbQ60649 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
ClpbQ60649 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Gm37917-201ENSMUST00000194711 392 ntBASIC13□□□□□ -0.33
ClpbQ60649 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Gm17795-201ENSMUST00000214505 757 ntBASIC13□□□□□ -0.33
ClpbQ60649 AC154687.2-201ENSMUST00000223853 640 ntBASIC13□□□□□ -0.33
ClpbQ60649 AC149294.4-201ENSMUST00000227870 882 ntBASIC13□□□□□ -0.33
ClpbQ60649 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Gm38094-201ENSMUST00000195864 2978 ntBASIC13□□□□□ -0.33
ClpbQ60649 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
ClpbQ60649 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
ClpbQ60649 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ClpbQ60649 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ClpbQ60649 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
ClpbQ60649 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC12.99□□□□□ -0.33
ClpbQ60649 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
ClpbQ60649 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ClpbQ60649 AC139054.1-201ENSMUST00000226898 1598 ntBASIC12.99□□□□□ -0.33
ClpbQ60649 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
ClpbQ60649 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ClpbQ60649 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
ClpbQ60649 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms