Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Gm20632-201ENSMUST00000176760 2427 ntBASIC12.37□□□□□ -0.43
Cdh11P55288 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdh11P55288 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdh11P55288 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdh11P55288 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.37□□□□□ -0.43
Cdh11P55288 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Cdh11P55288 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC12.36□□□□□ -0.43
Cdh11P55288 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.36□□□□□ -0.43
Cdh11P55288 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Cdh11P55288 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC12.36□□□□□ -0.43
Cdh11P55288 AC123645.1-201ENSMUST00000228469 605 ntBASIC12.36□□□□□ -0.43
Cdh11P55288 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC12.36□□□□□ -0.43
Cdh11P55288 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC12.36□□□□□ -0.43
Cdh11P55288 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Cdh11P55288 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdh11P55288 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC12.36□□□□□ -0.43
Cdh11P55288 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Cdh11P55288 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Cdh11P55288 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC12.35□□□□□ -0.43
Cdh11P55288 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Cdh11P55288 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Cdh11P55288 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC12.35□□□□□ -0.43
Cdh11P55288 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC12.35□□□□□ -0.43
Cdh11P55288 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC12.35□□□□□ -0.43
Cdh11P55288 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Cdh11P55288 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC12.35□□□□□ -0.43
Cdh11P55288 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC12.35□□□□□ -0.43
Cdh11P55288 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Cdh11P55288 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdh11P55288 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Cdh11P55288 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Cdh11P55288 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC12.34□□□□□ -0.43
Cdh11P55288 Mir1897-201ENSMUST00000122581 272 ntBASIC12.34□□□□□ -0.43
Cdh11P55288 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Cdh11P55288 Gm2445-201ENSMUST00000182798 989 ntBASIC12.34□□□□□ -0.43
Cdh11P55288 Gm7775-201ENSMUST00000218871 853 ntBASIC12.34□□□□□ -0.43
Cdh11P55288 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Dupd1-202ENSMUST00000224735 548 ntBASIC12.34□□□□□ -0.43
Cdh11P55288 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Cdh11P55288 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Cdh11P55288 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdh11P55288 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms