Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Lmx1bO88609 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Mir698-201ENSMUST00000102164 109 ntBASIC12.28□□□□□ -0.44
Lmx1bO88609 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Lmx1bO88609 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Gm27839-201ENSMUST00000184242 106 ntBASIC12.28□□□□□ -0.44
Lmx1bO88609 Gm2495-201ENSMUST00000191160 466 ntBASIC12.28□□□□□ -0.44
Lmx1bO88609 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 AC131690.1-201ENSMUST00000218406 374 ntBASIC12.28□□□□□ -0.44
Lmx1bO88609 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lmx1bO88609 Gm9816-201ENSMUST00000122292 1414 ntBASIC12.28□□□□□ -0.44
Lmx1bO88609 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC12.28□□□□□ -0.44
Lmx1bO88609 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lmx1bO88609 AL645783.1-201ENSMUST00000221416 1832 ntBASIC12.27□□□□□ -0.44
Lmx1bO88609 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lmx1bO88609 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lmx1bO88609 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Lmx1bO88609 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lmx1bO88609 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lmx1bO88609 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lmx1bO88609 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC12.27□□□□□ -0.44
Lmx1bO88609 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC12.27□□□□□ -0.44
Lmx1bO88609 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lmx1bO88609 Gm15889-202ENSMUST00000212669 2443 ntBASIC12.27□□□□□ -0.44
Lmx1bO88609 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Lmx1bO88609 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Gm4984-201ENSMUST00000115987 360 ntBASIC12.27□□□□□ -0.45
Lmx1bO88609 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Mir7085-201ENSMUST00000184353 66 ntBASIC12.27□□□□□ -0.45
Lmx1bO88609 Gm27772-201ENSMUST00000184900 187 ntBASIC12.27□□□□□ -0.45
Lmx1bO88609 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC12.27□□□□□ -0.45
Lmx1bO88609 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Gm8775-201ENSMUST00000170943 1327 ntBASIC12.27□□□□□ -0.45
Lmx1bO88609 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12.27□□□□□ -0.45
Lmx1bO88609 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Lmx1bO88609 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Lmx1bO88609 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Lmx1bO88609 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC12.26□□□□□ -0.45
Lmx1bO88609 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Lmx1bO88609 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC12.26□□□□□ -0.45
Lmx1bO88609 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.26□□□□□ -0.45
Lmx1bO88609 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.26□□□□□ -0.45
Lmx1bO88609 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Lmx1bO88609 Gm44719-201ENSMUST00000206404 149 ntBASIC12.26□□□□□ -0.45
Lmx1bO88609 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC12.26□□□□□ -0.45
Lmx1bO88609 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.26□□□□□ -0.45
Lmx1bO88609 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lmx1bO88609 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Lmx1bO88609 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms