Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Rbfox2-208ENSMUST00000227930 1218 ntBASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc40Q8BI79 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc40Q8BI79 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Gm7820-201ENSMUST00000121012 1052 ntBASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Gm27618-201ENSMUST00000183671 60 ntBASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 AC153872.1-201ENSMUST00000199539 128 ntBASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Gm44344-201ENSMUST00000200287 129 ntBASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ccdc40Q8BI79 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Gm3436-201ENSMUST00000179930 840 ntBASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Gm21470-201ENSMUST00000187680 696 ntBASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Gm37277-201ENSMUST00000194052 1111 ntBASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ccdc40Q8BI79 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms