Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn11aQ9R053 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Gm4819-201ENSMUST00000182170 1009 ntBASIC15.82■□□□□ 0.12
Scn11aQ9R053 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Scn11aQ9R053 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Scn11aQ9R053 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC15.82■□□□□ 0.12
Scn11aQ9R053 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 n-R5s77-201ENSMUST00000083757 119 ntBASIC15.82■□□□□ 0.12
Scn11aQ9R053 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Scn11aQ9R053 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Gm11628-201ENSMUST00000117568 171 ntBASIC15.81■□□□□ 0.12
Scn11aQ9R053 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Gm45186-201ENSMUST00000206874 478 ntBASIC15.81■□□□□ 0.12
Scn11aQ9R053 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Gm15897-201ENSMUST00000117770 1486 ntBASIC15.81■□□□□ 0.12
Scn11aQ9R053 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Gm4782-201ENSMUST00000168705 2046 ntBASIC15.81■□□□□ 0.12
Scn11aQ9R053 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Scn11aQ9R053 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Scn11aQ9R053 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Gm2606-201ENSMUST00000100754 1002 ntBASIC15.8■□□□□ 0.12
Scn11aQ9R053 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Gm7293-201ENSMUST00000216682 1007 ntBASIC15.8■□□□□ 0.12
Scn11aQ9R053 AC135669.1-202ENSMUST00000216742 540 ntBASIC15.8■□□□□ 0.12
Scn11aQ9R053 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Gm24255-201ENSMUST00000104481 128 ntBASIC15.8■□□□□ 0.12
Scn11aQ9R053 Gm11439-201ENSMUST00000118598 409 ntBASIC15.8■□□□□ 0.12
Scn11aQ9R053 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Mir5120-201ENSMUST00000175020 78 ntBASIC15.8■□□□□ 0.12
Scn11aQ9R053 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Gm43830-201ENSMUST00000198760 1067 ntBASIC15.8■□□□□ 0.12
Scn11aQ9R053 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn11aQ9R053 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Gm37827-201ENSMUST00000194486 1542 ntBASIC15.79■□□□□ 0.12
Scn11aQ9R053 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms