Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Cpsf3Q9QXK7 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Cpsf3Q9QXK7 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Cpsf3Q9QXK7 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Cpsf3Q9QXK7 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Gm12928-201ENSMUST00000117115 573 ntBASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Gm9002-201ENSMUST00000178437 499 ntBASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Gm5276-201ENSMUST00000196683 1047 ntBASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cpsf3Q9QXK7 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Gm45779-201ENSMUST00000212189 4064 ntBASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Gm11478-201ENSMUST00000117851 599 ntBASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 AL645783.1-201ENSMUST00000221416 1832 ntBASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC14.57□□□□□ -0.08
Cpsf3Q9QXK7 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Gm8775-201ENSMUST00000170943 1327 ntBASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cpsf3Q9QXK7 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Cpsf3Q9QXK7 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cpsf3Q9QXK7 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Cpsf3Q9QXK7 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC14.55□□□□□ -0.08
Cpsf3Q9QXK7 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cpsf3Q9QXK7 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cpsf3Q9QXK7 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC14.55□□□□□ -0.08
Cpsf3Q9QXK7 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 82.1 ms