Protein–RNA interactions for Protein: Q9JKS4

Ldb3, LIM domain-binding protein 3, mousemouse

Known RBP Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ldb3Q9JKS4 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ldb3Q9JKS4 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ldb3Q9JKS4 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ldb3Q9JKS4 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ldb3Q9JKS4 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ldb3Q9JKS4 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Ldb3Q9JKS4 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ldb3Q9JKS4 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ldb3Q9JKS4 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ldb3Q9JKS4 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ldb3Q9JKS4 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm13886-201ENSMUST00000117876 1183 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm12403-201ENSMUST00000121384 959 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm12033-201ENSMUST00000180654 1002 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm5559-201ENSMUST00000180755 1002 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm4335-201ENSMUST00000182581 1004 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Gm5069-202ENSMUST00000192714 1011 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ldb3Q9JKS4 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 AC154725.1-201ENSMUST00000224826 1961 ntBASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.3□□□□□ -0.44
Ldb3Q9JKS4 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms