Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Zkscan14-203ENSMUST00000198959 2243 ntBASIC15.7■□□□□ 0.1
Traf1P39428 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Traf1P39428 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
Traf1P39428 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC15.7■□□□□ 0.1
Traf1P39428 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC15.7■□□□□ 0.1
Traf1P39428 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC15.7■□□□□ 0.1
Traf1P39428 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC15.7■□□□□ 0.1
Traf1P39428 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Traf1P39428 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Mbnl2-204ENSMUST00000227012 2390 ntBASIC15.7■□□□□ 0.1
Traf1P39428 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC15.7■□□□□ 0.1
Traf1P39428 Gm42769-201ENSMUST00000198576 1659 ntBASIC15.7■□□□□ 0.1
Traf1P39428 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Traf1P39428 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Traf1P39428 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
Traf1P39428 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Traf1P39428 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Gm5303-201ENSMUST00000117943 1252 ntBASIC15.69■□□□□ 0.1
Traf1P39428 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC15.69■□□□□ 0.1
Traf1P39428 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC15.69■□□□□ 0.1
Traf1P39428 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC15.69■□□□□ 0.1
Traf1P39428 Gm18473-201ENSMUST00000220543 868 ntBASIC15.69■□□□□ 0.1
Traf1P39428 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Traf1P39428 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Gm13730-201ENSMUST00000121036 1462 ntBASIC15.69■□□□□ 0.1
Traf1P39428 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC15.69■□□□□ 0.1
Traf1P39428 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC15.69■□□□□ 0.1
Traf1P39428 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
Traf1P39428 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Traf1P39428 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Gm8337-201ENSMUST00000187358 1938 ntBASIC15.68■□□□□ 0.1
Traf1P39428 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Traf1P39428 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Traf1P39428 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Traf1P39428 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC15.68■□□□□ 0.1
Traf1P39428 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Traf1P39428 Gm13612-201ENSMUST00000119276 390 ntBASIC15.68■□□□□ 0.1
Traf1P39428 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC15.68■□□□□ 0.1
Traf1P39428 Gm27847-201ENSMUST00000183711 107 ntBASIC15.68■□□□□ 0.1
Traf1P39428 Gm27375-201ENSMUST00000183799 107 ntBASIC15.68■□□□□ 0.1
Traf1P39428 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC15.68■□□□□ 0.1
Traf1P39428 Gm38230-201ENSMUST00000193572 1159 ntBASIC15.68■□□□□ 0.1
Traf1P39428 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Traf1P39428 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
Traf1P39428 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC15.68■□□□□ 0.1
Traf1P39428 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms