Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Cd40lgP27548 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Cd40lgP27548 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC12.57□□□□□ -0.4
Cd40lgP27548 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Cd40lgP27548 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC12.57□□□□□ -0.4
Cd40lgP27548 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Cd40lgP27548 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Cd40lgP27548 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Cd40lgP27548 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Cd40lgP27548 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Cd40lgP27548 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cd40lgP27548 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.56□□□□□ -0.4
Cd40lgP27548 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Cd40lgP27548 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC12.56□□□□□ -0.4
Cd40lgP27548 Matn2-206ENSMUST00000228570 2798 ntBASIC12.56□□□□□ -0.4
Cd40lgP27548 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.56□□□□□ -0.4
Cd40lgP27548 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.56□□□□□ -0.4
Cd40lgP27548 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC12.56□□□□□ -0.4
Cd40lgP27548 Gm29667-201ENSMUST00000190817 490 ntBASIC12.56□□□□□ -0.4
Cd40lgP27548 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.56□□□□□ -0.4
Cd40lgP27548 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC12.56□□□□□ -0.4
Cd40lgP27548 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Cd40lgP27548 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cd40lgP27548 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC12.55□□□□□ -0.4
Cd40lgP27548 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC12.55□□□□□ -0.4
Cd40lgP27548 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.55□□□□□ -0.4
Cd40lgP27548 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Arhgef33-209ENSMUST00000225223 714 ntBASIC12.55□□□□□ -0.4
Cd40lgP27548 Wdyhv1-206ENSMUST00000227142 786 ntBASIC12.55□□□□□ -0.4
Cd40lgP27548 AC149294.4-201ENSMUST00000227870 882 ntBASIC12.55□□□□□ -0.4
Cd40lgP27548 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
Cd40lgP27548 Gm38094-201ENSMUST00000195864 2978 ntBASIC12.55□□□□□ -0.4
Cd40lgP27548 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cd40lgP27548 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms