Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Msx1P13297 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Msx1P13297 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
Msx1P13297 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.96□□□□□ -0.33
Msx1P13297 Gm6244-201ENSMUST00000178732 841 ntBASIC12.96□□□□□ -0.33
Msx1P13297 Gm37641-201ENSMUST00000193837 239 ntBASIC12.96□□□□□ -0.33
Msx1P13297 Gm29747-201ENSMUST00000194764 585 ntBASIC12.96□□□□□ -0.33
Msx1P13297 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC12.96□□□□□ -0.33
Msx1P13297 Gm43452-201ENSMUST00000201873 991 ntBASIC12.96□□□□□ -0.33
Msx1P13297 Gm45071-201ENSMUST00000205353 571 ntBASIC12.96□□□□□ -0.33
Msx1P13297 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Msx1P13297 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Msx1P13297 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Msx1P13297 Gm26226-201ENSMUST00000082509 116 ntBASIC12.96□□□□□ -0.33
Msx1P13297 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Msx1P13297 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Msx1P13297 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Msx1P13297 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Msx1P13297 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Msx1P13297 AC154527.2-201ENSMUST00000225256 1466 ntBASIC12.96□□□□□ -0.34
Msx1P13297 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Msx1P13297 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Msx1P13297 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Msx1P13297 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC12.96□□□□□ -0.34
Msx1P13297 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Msx1P13297 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Msx1P13297 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Msx1P13297 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Msx1P13297 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Msx1P13297 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
Msx1P13297 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
Msx1P13297 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Msx1P13297 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Msx1P13297 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC12.95□□□□□ -0.34
Msx1P13297 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Msx1P13297 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Olfr1397-ps1-201ENSMUST00000121388 962 ntBASIC12.95□□□□□ -0.34
Msx1P13297 Mpv17l-202ENSMUST00000124947 768 ntTSL 3 BASIC12.95□□□□□ -0.34
Msx1P13297 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC12.95□□□□□ -0.34
Msx1P13297 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
Msx1P13297 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Gm37629-201ENSMUST00000193635 1050 ntBASIC12.95□□□□□ -0.34
Msx1P13297 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.95□□□□□ -0.34
Msx1P13297 Gm5279-201ENSMUST00000199575 745 ntBASIC12.95□□□□□ -0.34
Msx1P13297 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Lsm3-205ENSMUST00000206947 618 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Gm45166-201ENSMUST00000209073 683 ntBASIC12.95□□□□□ -0.34
Msx1P13297 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Gm7446-201ENSMUST00000221035 1240 ntBASIC12.95□□□□□ -0.34
Msx1P13297 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.95□□□□□ -0.34
Msx1P13297 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Rnf212-201ENSMUST00000068946 288 ntTSL 5 BASIC12.95□□□□□ -0.34
Msx1P13297 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC12.95□□□□□ -0.34
Msx1P13297 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Gm9816-201ENSMUST00000122292 1414 ntBASIC12.95□□□□□ -0.34
Msx1P13297 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Msx1P13297 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Msx1P13297 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC12.95□□□□□ -0.34
Msx1P13297 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.95□□□□□ -0.34
Msx1P13297 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Msx1P13297 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Gm15889-202ENSMUST00000212669 2443 ntBASIC12.94□□□□□ -0.34
Msx1P13297 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC12.94□□□□□ -0.34
Msx1P13297 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Msx1P13297 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Msx1P13297 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC12.94□□□□□ -0.34
Msx1P13297 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC12.94□□□□□ -0.34
Msx1P13297 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Msx1P13297 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms