Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Il17rd-203ENSMUST00000225146 3366 ntBASIC13.28□□□□□ -0.28
Chd3B1AR17 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC13.28□□□□□ -0.28
Chd3B1AR17 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
Chd3B1AR17 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
Chd3B1AR17 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Gm8213-201ENSMUST00000118191 441 ntBASIC13.28□□□□□ -0.28
Chd3B1AR17 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC13.28□□□□□ -0.28
Chd3B1AR17 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC13.28□□□□□ -0.28
Chd3B1AR17 CT573086.1-201ENSMUST00000227202 1074 ntBASIC13.28□□□□□ -0.28
Chd3B1AR17 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Chd3B1AR17 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC13.28□□□□□ -0.28
Chd3B1AR17 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
Chd3B1AR17 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC13.28□□□□□ -0.28
Chd3B1AR17 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
Chd3B1AR17 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Chd3B1AR17 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Chd3B1AR17 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Chd3B1AR17 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC13.27□□□□□ -0.28
Chd3B1AR17 AC159649.2-201ENSMUST00000222984 3223 ntBASIC13.27□□□□□ -0.28
Chd3B1AR17 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC13.27□□□□□ -0.28
Chd3B1AR17 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Chd3B1AR17 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Chd3B1AR17 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Chd3B1AR17 Mir1938-201ENSMUST00000158746 100 ntBASIC13.27□□□□□ -0.28
Chd3B1AR17 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.28
Chd3B1AR17 Gm44397-201ENSMUST00000195950 113 ntBASIC13.27□□□□□ -0.28
Chd3B1AR17 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Chd3B1AR17 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Chd3B1AR17 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Chd3B1AR17 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC13.27□□□□□ -0.29
Chd3B1AR17 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Chd3B1AR17 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Gm11814-201ENSMUST00000119515 929 ntBASIC13.27□□□□□ -0.29
Chd3B1AR17 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC13.27□□□□□ -0.29
Chd3B1AR17 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC13.27□□□□□ -0.29
Chd3B1AR17 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.27□□□□□ -0.29
Chd3B1AR17 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Gm27847-201ENSMUST00000183711 107 ntBASIC13.27□□□□□ -0.29
Chd3B1AR17 Gm27375-201ENSMUST00000183799 107 ntBASIC13.27□□□□□ -0.29
Chd3B1AR17 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC13.27□□□□□ -0.29
Chd3B1AR17 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Chd3B1AR17 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Gm37133-201ENSMUST00000192705 1922 ntBASIC13.26□□□□□ -0.29
Chd3B1AR17 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Chd3B1AR17 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
Chd3B1AR17 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC13.26□□□□□ -0.29
Chd3B1AR17 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Chd3B1AR17 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Chd3B1AR17 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC13.26□□□□□ -0.29
Chd3B1AR17 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC13.26□□□□□ -0.29
Chd3B1AR17 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Gm44064-201ENSMUST00000204964 1087 ntBASIC13.26□□□□□ -0.29
Chd3B1AR17 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Chd3B1AR17 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Chd3B1AR17 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms