Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Scn11aQ9R053 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Gm11405-201ENSMUST00000118689 1556 ntBASIC15.86■□□□□ 0.13
Scn11aQ9R053 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Gm14381-201ENSMUST00000122105 414 ntBASIC15.86■□□□□ 0.13
Scn11aQ9R053 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC15.86■□□□□ 0.13
Scn11aQ9R053 AC132384.14-201ENSMUST00000219346 1147 ntBASIC15.86■□□□□ 0.13
Scn11aQ9R053 Gm19163-201ENSMUST00000223313 780 ntBASIC15.86■□□□□ 0.13
Scn11aQ9R053 AC069562.3-201ENSMUST00000225387 587 ntBASIC15.86■□□□□ 0.13
Scn11aQ9R053 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Scn11aQ9R053 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC15.85■□□□□ 0.13
Scn11aQ9R053 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC15.85■□□□□ 0.13
Scn11aQ9R053 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Gm8099-201ENSMUST00000200510 742 ntBASIC15.85■□□□□ 0.13
Scn11aQ9R053 Abhd11os-203ENSMUST00000222613 363 ntBASIC15.85■□□□□ 0.13
Scn11aQ9R053 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.85■□□□□ 0.13
Scn11aQ9R053 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC15.85■□□□□ 0.13
Scn11aQ9R053 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC15.85■□□□□ 0.13
Scn11aQ9R053 CT009718.3-201ENSMUST00000221116 367 ntBASIC15.85■□□□□ 0.13
Scn11aQ9R053 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Scn11aQ9R053 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Scn11aQ9R053 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Gm10729-202ENSMUST00000193403 1375 ntBASIC15.84■□□□□ 0.13
Scn11aQ9R053 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC15.84■□□□□ 0.13
Scn11aQ9R053 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Gm43579-201ENSMUST00000202387 1307 ntBASIC15.84■□□□□ 0.13
Scn11aQ9R053 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Scn11aQ9R053 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC15.83■□□□□ 0.13
Scn11aQ9R053 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
Scn11aQ9R053 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
Scn11aQ9R053 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Scn11aQ9R053 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Scn11aQ9R053 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Scn11aQ9R053 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Scn11aQ9R053 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn11aQ9R053 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Scn11aQ9R053 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Scn11aQ9R053 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms