Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdc40Q9DC48 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm19863-201ENSMUST00000192480 2218 ntBASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm6912-201ENSMUST00000117218 544 ntBASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm11918-201ENSMUST00000121660 179 ntBASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm45668-201ENSMUST00000211271 493 ntBASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm18624-201ENSMUST00000220966 658 ntBASIC12.66□□□□□ -0.38
Cdc40Q9DC48 AC139580.1-202ENSMUST00000223574 928 ntBASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Gm42769-201ENSMUST00000198576 1659 ntBASIC12.66□□□□□ -0.38
Cdc40Q9DC48 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 CT030684.3-201ENSMUST00000227308 2445 ntBASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdc40Q9DC48 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 AC114543.1-201ENSMUST00000226451 1558 ntBASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Gm29741-201ENSMUST00000192667 421 ntBASIC12.65□□□□□ -0.38
Cdc40Q9DC48 AC155286.1-201ENSMUST00000218632 448 ntBASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Gm19220-201ENSMUST00000222682 803 ntBASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdc40Q9DC48 Gm37691-201ENSMUST00000192147 2573 ntBASIC12.65□□□□□ -0.39
Cdc40Q9DC48 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
Cdc40Q9DC48 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.39
Cdc40Q9DC48 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Cdc40Q9DC48 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC12.64□□□□□ -0.39
Cdc40Q9DC48 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms