Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Gm45053-201ENSMUST00000206112 2499 ntBASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ddx28Q9CWT6 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm22065-201ENSMUST00000103753 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm22066-201ENSMUST00000103761 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm24932-201ENSMUST00000103763 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm24115-201ENSMUST00000103799 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm22190-201ENSMUST00000103827 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm22191-201ENSMUST00000103831 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm24721-201ENSMUST00000103849 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm28018-201ENSMUST00000103869 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm26399-201ENSMUST00000103937 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm25349-201ENSMUST00000177728 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm23616-201ENSMUST00000177797 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm25871-201ENSMUST00000177816 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm24752-201ENSMUST00000178240 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm24496-201ENSMUST00000178287 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm25649-201ENSMUST00000178476 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm25548-201ENSMUST00000178681 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm9824-201ENSMUST00000178707 561 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm23147-201ENSMUST00000178841 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm26095-201ENSMUST00000179270 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm22171-201ENSMUST00000179283 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm23936-201ENSMUST00000179354 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm22619-201ENSMUST00000179516 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm25255-201ENSMUST00000179579 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm24755-201ENSMUST00000179691 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm26506-201ENSMUST00000179692 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm25086-201ENSMUST00000179931 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm23243-201ENSMUST00000180047 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm24659-201ENSMUST00000180212 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm24169-201ENSMUST00000180244 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm23689-201ENSMUST00000180354 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm27359-201ENSMUST00000184153 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm27785-201ENSMUST00000184268 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm27466-201ENSMUST00000184396 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm27703-201ENSMUST00000184836 110 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm43474-201ENSMUST00000196415 774 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm44335-201ENSMUST00000196879 141 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm44297-201ENSMUST00000198304 141 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm44346-201ENSMUST00000198851 141 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Gm9109-201ENSMUST00000120254 1405 ntBASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC12.78□□□□□ -0.36
Ddx28Q9CWT6 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.36
Ddx28Q9CWT6 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.77□□□□□ -0.36
Ddx28Q9CWT6 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ddx28Q9CWT6 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ddx28Q9CWT6 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ddx28Q9CWT6 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ddx28Q9CWT6 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ddx28Q9CWT6 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 79.1 ms