Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Gm26464-201ENSMUST00000157094 305 ntBASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Gm28631-201ENSMUST00000190740 334 ntBASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Brf1Q8CFK2 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 AC139350.1-201ENSMUST00000227064 1594 ntBASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Gm11524-201ENSMUST00000119349 807 ntBASIC16.43■□□□□ 0.22
Brf1Q8CFK2 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 AL593843.1-201ENSMUST00000195891 145 ntBASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Gm3695-201ENSMUST00000087222 1009 ntBASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Brf1Q8CFK2 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 AC135669.1-201ENSMUST00000213585 412 ntBASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Brf1Q8CFK2 AC154262.2-201ENSMUST00000224310 2293 ntBASIC16.42■□□□□ 0.22
Brf1Q8CFK2 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 AC155258.1-201ENSMUST00000219303 253 ntBASIC16.41■□□□□ 0.22
Brf1Q8CFK2 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Brf1Q8CFK2 Gm21038-201ENSMUST00000222205 1383 ntBASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Brf1Q8CFK2 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms