Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cux1P53564 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cux1P53564 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cux1P53564 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Cux1P53564 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC20.58■□□□□ 0.88
Cux1P53564 AA914427-201ENSMUST00000193194 1166 ntBASIC20.58■□□□□ 0.88
Cux1P53564 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Cux1P53564 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cux1P53564 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Cux1P53564 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cux1P53564 Gm38157-201ENSMUST00000194178 1698 ntBASIC20.58■□□□□ 0.88
Cux1P53564 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Cux1P53564 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Cux1P53564 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
Cux1P53564 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Cux1P53564 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Cux1P53564 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
Cux1P53564 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC20.57■□□□□ 0.88
Cux1P53564 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC20.57■□□□□ 0.88
Cux1P53564 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Gm38317-201ENSMUST00000195564 343 ntBASIC20.57■□□□□ 0.88
Cux1P53564 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC20.57■□□□□ 0.88
Cux1P53564 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC20.57■□□□□ 0.88
Cux1P53564 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Cux1P53564 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cux1P53564 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
Cux1P53564 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Gm8862-201ENSMUST00000198379 1346 ntBASIC20.56■□□□□ 0.88
Cux1P53564 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Cux1P53564 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC20.56■□□□□ 0.88
Cux1P53564 Gm12176-201ENSMUST00000121420 875 ntBASIC20.56■□□□□ 0.88
Cux1P53564 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Cux1P53564 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC20.56■□□□□ 0.88
Cux1P53564 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Gm16505-201ENSMUST00000179981 232 ntBASIC20.56■□□□□ 0.88
Cux1P53564 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC20.56■□□□□ 0.88
Cux1P53564 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Gm18615-201ENSMUST00000222919 1031 ntBASIC20.56■□□□□ 0.88
Cux1P53564 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC20.56■□□□□ 0.88
Cux1P53564 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cux1P53564 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Gm19221-201ENSMUST00000221827 1477 ntBASIC20.55■□□□□ 0.88
Cux1P53564 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC20.55■□□□□ 0.88
Cux1P53564 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Cux1P53564 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC20.55■□□□□ 0.88
Cux1P53564 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Gm11439-201ENSMUST00000118598 409 ntBASIC20.55■□□□□ 0.88
Cux1P53564 Gm14726-201ENSMUST00000120623 896 ntBASIC20.55■□□□□ 0.88
Cux1P53564 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC20.55■□□□□ 0.88
Cux1P53564 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Cux1P53564 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC20.55■□□□□ 0.88
Cux1P53564 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Cux1P53564 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Cux1P53564 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cux1P53564 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
Cux1P53564 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux1P53564 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 86.1 ms