Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm43073-201ENSMUST00000198200 1189 ntBASIC16.26■□□□□ 0.19
Rfx1P48377 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Gm45612-201ENSMUST00000211320 160 ntBASIC16.26■□□□□ 0.19
Rfx1P48377 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 AC149294.4-201ENSMUST00000227870 882 ntBASIC16.26■□□□□ 0.19
Rfx1P48377 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
Rfx1P48377 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Rfx1P48377 Gm5939-201ENSMUST00000119613 2874 ntBASIC16.26■□□□□ 0.19
Rfx1P48377 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Rfx1P48377 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Rfx1P48377 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx1P48377 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Rfx1P48377 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Rfx1P48377 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC16.25■□□□□ 0.19
Rfx1P48377 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC16.25■□□□□ 0.19
Rfx1P48377 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC16.25■□□□□ 0.19
Rfx1P48377 Gm6443-201ENSMUST00000203599 874 ntBASIC16.25■□□□□ 0.19
Rfx1P48377 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.25■□□□□ 0.19
Rfx1P48377 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Rfx1P48377 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Rfx1P48377 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Rfx1P48377 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Rfx1P48377 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx1P48377 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Rfx1P48377 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Gm26616-202ENSMUST00000195676 3107 ntBASIC16.24■□□□□ 0.19
Rfx1P48377 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC16.24■□□□□ 0.19
Rfx1P48377 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Rfx1P48377 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.24■□□□□ 0.19
Rfx1P48377 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC16.24■□□□□ 0.19
Rfx1P48377 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
Rfx1P48377 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Rfx1P48377 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Rfx1P48377 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Gm4782-201ENSMUST00000168705 2046 ntBASIC16.24■□□□□ 0.19
Rfx1P48377 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx1P48377 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Rfx1P48377 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Gm13730-201ENSMUST00000121036 1462 ntBASIC16.23■□□□□ 0.19
Rfx1P48377 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Rfx1P48377 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Rfx1P48377 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
Rfx1P48377 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC16.23■□□□□ 0.19
Rfx1P48377 Gm6539-201ENSMUST00000119157 1064 ntBASIC16.23■□□□□ 0.19
Rfx1P48377 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC16.23■□□□□ 0.19
Rfx1P48377 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC16.23■□□□□ 0.19
Rfx1P48377 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx1P48377 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms