Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Gm8018-201ENSMUST00000173536 789 ntBASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Gm9132-201ENSMUST00000210182 832 ntBASIC18.09■□□□□ 0.49
Scn4aQ9ER60 AC133602.1-201ENSMUST00000227510 509 ntBASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Gm45856-201ENSMUST00000212752 416 ntBASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Scn4aQ9ER60 Gm9387-201ENSMUST00000098624 1320 ntBASIC18.08■□□□□ 0.49
Scn4aQ9ER60 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Scn4aQ9ER60 AC158355.1-201ENSMUST00000215895 1705 ntBASIC18.08■□□□□ 0.49
Scn4aQ9ER60 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC18.08■□□□□ 0.49
Scn4aQ9ER60 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Mirlet7i-201ENSMUST00000083472 85 ntBASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn4aQ9ER60 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Gm11451-201ENSMUST00000118946 630 ntBASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Gm6485-201ENSMUST00000160676 439 ntBASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC18.07■□□□□ 0.48
Scn4aQ9ER60 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Gm45925-201ENSMUST00000218882 744 ntBASIC18.07■□□□□ 0.48
Scn4aQ9ER60 CT025602.2-201ENSMUST00000226553 772 ntBASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Gm9996-201ENSMUST00000070359 913 ntBASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Nupl1-207ENSMUST00000225311 2475 ntBASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC18.07■□□□□ 0.48
Scn4aQ9ER60 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms