Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc28aQ8CEI3 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc28aQ8CEI3 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc28aQ8CEI3 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Ccdc28aQ8CEI3 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc28aQ8CEI3 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc28aQ8CEI3 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Ccdc28aQ8CEI3 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gm14494-201ENSMUST00000118786 435 ntBASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gm15467-201ENSMUST00000120582 445 ntBASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gm18889-201ENSMUST00000174284 929 ntBASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gm27494-201ENSMUST00000184735 189 ntBASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 AC121804.3-201ENSMUST00000223420 295 ntBASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gm7002-201ENSMUST00000221386 2165 ntBASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc28aQ8CEI3 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Gm25287-201ENSMUST00000103846 110 ntBASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Gm22918-201ENSMUST00000103855 110 ntBASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Gm6916-202ENSMUST00000205523 195 ntBASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Dupd1-202ENSMUST00000224735 548 ntBASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Ccdc28aQ8CEI3 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Gm13332-201ENSMUST00000120451 1398 ntBASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms