Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Chd3B1AR17 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Chd3B1AR17 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
Chd3B1AR17 Gm22018-201ENSMUST00000104357 131 ntBASIC13.33□□□□□ -0.27
Chd3B1AR17 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Chd3B1AR17 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.27
Chd3B1AR17 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
Chd3B1AR17 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
Chd3B1AR17 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC13.33□□□□□ -0.27
Chd3B1AR17 Gm42550-201ENSMUST00000201553 960 ntBASIC13.33□□□□□ -0.27
Chd3B1AR17 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Chd3B1AR17 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Chd3B1AR17 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Chd3B1AR17 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC13.33□□□□□ -0.28
Chd3B1AR17 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Acot6-202ENSMUST00000222921 3622 ntBASIC13.33□□□□□ -0.28
Chd3B1AR17 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC13.33□□□□□ -0.28
Chd3B1AR17 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC13.33□□□□□ -0.28
Chd3B1AR17 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Chd3B1AR17 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Chd3B1AR17 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC13.33□□□□□ -0.28
Chd3B1AR17 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC13.33□□□□□ -0.28
Chd3B1AR17 Mir1982-201ENSMUST00000157368 74 ntBASIC13.33□□□□□ -0.28
Chd3B1AR17 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Chd3B1AR17 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Chd3B1AR17 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Chd3B1AR17 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
Chd3B1AR17 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC13.32□□□□□ -0.28
Chd3B1AR17 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Chd3B1AR17 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 AC114008.2-201ENSMUST00000227699 1347 ntBASIC13.32□□□□□ -0.28
Chd3B1AR17 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Chd3B1AR17 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Gm7899-201ENSMUST00000192935 1897 ntBASIC13.32□□□□□ -0.28
Chd3B1AR17 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC13.32□□□□□ -0.28
Chd3B1AR17 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Chd3B1AR17 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC13.32□□□□□ -0.28
Chd3B1AR17 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
Chd3B1AR17 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC13.32□□□□□ -0.28
Chd3B1AR17 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Chd3B1AR17 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Chd3B1AR17 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Chd3B1AR17 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Chd3B1AR17 Gm11400-201ENSMUST00000120853 1214 ntBASIC13.31□□□□□ -0.28
Chd3B1AR17 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Proscos-202ENSMUST00000178990 666 ntBASIC13.31□□□□□ -0.28
Chd3B1AR17 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC13.31□□□□□ -0.28
Chd3B1AR17 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC13.31□□□□□ -0.28
Chd3B1AR17 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC13.31□□□□□ -0.28
Chd3B1AR17 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Chd3B1AR17 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms