Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 G6pdx-201ENSMUST00000004327 2652 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Smco4Q9JIS3 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Gm9252-201ENSMUST00000172364 1602 ntBASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 AC126549.2-201ENSMUST00000223997 1976 ntBASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Gm18622-201ENSMUST00000219361 595 ntBASIC10.91□□□□□ -0.66
Smco4Q9JIS3 AC122024.2-201ENSMUST00000220086 871 ntBASIC10.91□□□□□ -0.66
Smco4Q9JIS3 AC164629.5-201ENSMUST00000220387 632 ntBASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Smco4Q9JIS3 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Smco4Q9JIS3 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms