Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gm44891-201ENSMUST00000208817 2223 ntBASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gm6539-201ENSMUST00000119157 1064 ntBASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gm12882-201ENSMUST00000121696 517 ntBASIC13.5□□□□□ -0.25
Lima1Q9ERG0 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gm44335-201ENSMUST00000196879 141 ntBASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gm44297-201ENSMUST00000198304 141 ntBASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gm44346-201ENSMUST00000198851 141 ntBASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gm43125-201ENSMUST00000201724 730 ntBASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Lima1Q9ERG0 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm13015-201ENSMUST00000118674 204 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm29310-201ENSMUST00000185468 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21825-201ENSMUST00000185728 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm29109-201ENSMUST00000185895 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21896-201ENSMUST00000186520 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21873-201ENSMUST00000186728 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21794-201ENSMUST00000187056 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21880-201ENSMUST00000187275 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21826-201ENSMUST00000187451 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21198-201ENSMUST00000188393 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21749-201ENSMUST00000189343 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21901-201ENSMUST00000189568 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm29424-201ENSMUST00000189716 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm28599-201ENSMUST00000189838 694 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21867-201ENSMUST00000189917 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm29269-201ENSMUST00000190087 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21722-201ENSMUST00000190153 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm28423-201ENSMUST00000190701 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21899-201ENSMUST00000190745 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21910-201ENSMUST00000191163 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21849-201ENSMUST00000191571 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm28678-201ENSMUST00000191593 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm20910-201ENSMUST00000193268 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Gm21871-201ENSMUST00000194621 696 ntBASIC13.49□□□□□ -0.25
Lima1Q9ERG0 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms