Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm2517-201ENSMUST00000215651 348 ntBASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Snora73b-201ENSMUST00000083419 205 ntBASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Gm7551-201ENSMUST00000089593 1074 ntBASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Gm21811-201ENSMUST00000096485 930 ntBASIC18.14■□□□□ 0.49
Scn4aQ9ER60 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Scn4aQ9ER60 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Gm43275-201ENSMUST00000202053 1020 ntBASIC18.13■□□□□ 0.49
Scn4aQ9ER60 AC171241.1-201ENSMUST00000228144 1166 ntBASIC18.13■□□□□ 0.49
Scn4aQ9ER60 AC167013.1-201ENSMUST00000228592 202 ntBASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Scn4aQ9ER60 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Gm13668-201ENSMUST00000119237 1001 ntBASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Gm12196-201ENSMUST00000120954 262 ntBASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Gm44980-201ENSMUST00000205826 314 ntBASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scn4aQ9ER60 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Gm42682-201ENSMUST00000198349 1265 ntBASIC18.11■□□□□ 0.49
Scn4aQ9ER60 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Gm45909-201ENSMUST00000212413 1031 ntBASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn4aQ9ER60 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Vmn1r-ps63-201ENSMUST00000174565 989 ntBASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Gm2673-201ENSMUST00000120958 1608 ntBASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Gm38102-201ENSMUST00000192791 1935 ntBASIC18.1■□□□□ 0.49
Scn4aQ9ER60 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms