Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm8116-201ENSMUST00000182917 1201 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Mir6990-201ENSMUST00000183724 91 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm29310-201ENSMUST00000185468 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21825-201ENSMUST00000185728 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm29109-201ENSMUST00000185895 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21896-201ENSMUST00000186520 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21873-201ENSMUST00000186728 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21794-201ENSMUST00000187056 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21880-201ENSMUST00000187275 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21826-201ENSMUST00000187451 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21198-201ENSMUST00000188393 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21749-201ENSMUST00000189343 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21901-201ENSMUST00000189568 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm29424-201ENSMUST00000189716 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm28599-201ENSMUST00000189838 694 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21867-201ENSMUST00000189917 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm29269-201ENSMUST00000190087 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21722-201ENSMUST00000190153 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm28423-201ENSMUST00000190701 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21899-201ENSMUST00000190745 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21910-201ENSMUST00000191163 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21849-201ENSMUST00000191571 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm28678-201ENSMUST00000191593 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm20910-201ENSMUST00000193268 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm21871-201ENSMUST00000194621 696 ntBASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx28Q9CWT6 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Gm14701-201ENSMUST00000117156 348 ntBASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Gm6539-201ENSMUST00000119157 1064 ntBASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Gm12882-201ENSMUST00000121696 517 ntBASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 CT025626.1-201ENSMUST00000223735 1455 ntBASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Gm6159-201ENSMUST00000191249 1724 ntBASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ddx28Q9CWT6 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms