Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm13385-201ENSMUST00000121089 220 ntBASIC11.65□□□□□ -0.54
Col8a1Q00780 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC11.65□□□□□ -0.54
Col8a1Q00780 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC11.65□□□□□ -0.54
Col8a1Q00780 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Col8a1Q00780 Gm2383-201ENSMUST00000181461 807 ntBASIC11.65□□□□□ -0.54
Col8a1Q00780 Gm37259-201ENSMUST00000193903 849 ntBASIC11.65□□□□□ -0.54
Col8a1Q00780 Ighv8-14-201ENSMUST00000196781 358 ntBASIC11.65□□□□□ -0.54
Col8a1Q00780 Olfr284-202ENSMUST00000206647 966 ntBASIC11.65□□□□□ -0.54
Col8a1Q00780 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC11.65□□□□□ -0.54
Col8a1Q00780 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC11.65□□□□□ -0.54
Col8a1Q00780 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Col8a1Q00780 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Col8a1Q00780 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
Col8a1Q00780 Gm37015-201ENSMUST00000192763 1521 ntBASIC11.65□□□□□ -0.55
Col8a1Q00780 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Col8a1Q00780 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Col8a1Q00780 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Col8a1Q00780 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Col8a1Q00780 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC11.64□□□□□ -0.55
Col8a1Q00780 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Col8a1Q00780 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Col8a1Q00780 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm12203-201ENSMUST00000118235 598 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm12209-201ENSMUST00000120089 596 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm11557-201ENSMUST00000120200 1008 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm11793-201ENSMUST00000120433 981 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm12134-201ENSMUST00000122109 520 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm17376-201ENSMUST00000166016 84 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm8927-201ENSMUST00000181978 981 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm5850-201ENSMUST00000192923 1206 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm43133-201ENSMUST00000197472 463 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm10608-202ENSMUST00000213924 676 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Gm3222-201ENSMUST00000071282 990 ntBASIC11.64□□□□□ -0.55
Col8a1Q00780 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Col8a1Q00780 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Col8a1Q00780 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC11.64□□□□□ -0.55
Col8a1Q00780 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC11.64□□□□□ -0.55
Col8a1Q00780 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC11.64□□□□□ -0.55
Col8a1Q00780 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col8a1Q00780 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC11.63□□□□□ -0.55
Col8a1Q00780 Gm12241-201ENSMUST00000118330 726 ntBASIC11.63□□□□□ -0.55
Col8a1Q00780 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col8a1Q00780 Gm22902-201ENSMUST00000158488 302 ntBASIC11.63□□□□□ -0.55
Col8a1Q00780 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC11.63□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms