Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Lig3P97386 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Lig3P97386 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
Lig3P97386 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
Lig3P97386 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Gm44981-201ENSMUST00000205549 1943 ntBASIC14.97□□□□□ -0.01
Lig3P97386 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Lig3P97386 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lig3P97386 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.96□□□□□ -0.01
Lig3P97386 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Lig3P97386 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC14.96□□□□□ -0.01
Lig3P97386 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.01
Lig3P97386 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Lig3P97386 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC14.96□□□□□ -0.01
Lig3P97386 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC14.96□□□□□ -0.01
Lig3P97386 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
Lig3P97386 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC14.96□□□□□ -0.01
Lig3P97386 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lig3P97386 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Lig3P97386 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Lig3P97386 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC14.96□□□□□ -0.02
Lig3P97386 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Lig3P97386 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Lig3P97386 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.02
Lig3P97386 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Lig3P97386 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC14.95□□□□□ -0.02
Lig3P97386 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Lig3P97386 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Gm7820-201ENSMUST00000121012 1052 ntBASIC14.95□□□□□ -0.02
Lig3P97386 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC14.95□□□□□ -0.02
Lig3P97386 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.95□□□□□ -0.02
Lig3P97386 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC14.95□□□□□ -0.02
Lig3P97386 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Lig3P97386 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lig3P97386 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Lig3P97386 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.94□□□□□ -0.02
Lig3P97386 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Lig3P97386 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
Lig3P97386 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
Lig3P97386 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC14.94□□□□□ -0.02
Lig3P97386 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC14.94□□□□□ -0.02
Lig3P97386 Gm28911-201ENSMUST00000188837 117 ntBASIC14.94□□□□□ -0.02
Lig3P97386 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC14.94□□□□□ -0.02
Lig3P97386 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC14.94□□□□□ -0.02
Lig3P97386 Gm45453-201ENSMUST00000211758 853 ntBASIC14.94□□□□□ -0.02
Lig3P97386 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC14.94□□□□□ -0.02
Lig3P97386 AC149588.3-201ENSMUST00000227515 150 ntBASIC14.94□□□□□ -0.02
Lig3P97386 AC156016.3-201ENSMUST00000228623 344 ntBASIC14.94□□□□□ -0.02
Lig3P97386 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Lig3P97386 Gm5422-201ENSMUST00000050717 2721 ntBASIC14.94□□□□□ -0.02
Lig3P97386 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Lig3P97386 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lig3P97386 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
Lig3P97386 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 62.8 ms