Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Esp36-201ENSMUST00000172814 1117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Esp36-202ENSMUST00000177882 1117 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC13.03□□□□□ -0.32
Msx1P13297 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Olfr202-202ENSMUST00000201687 1232 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Msx1P13297 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC13.03□□□□□ -0.32
Msx1P13297 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC13.03□□□□□ -0.32
Msx1P13297 CT025561.1-201ENSMUST00000214972 674 ntBASIC13.03□□□□□ -0.32
Msx1P13297 AC139350.3-201ENSMUST00000226151 420 ntBASIC13.03□□□□□ -0.32
Msx1P13297 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Msx1P13297 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC13.03□□□□□ -0.32
Msx1P13297 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
Msx1P13297 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Msx1P13297 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Msx1P13297 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Msx1P13297 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Msx1P13297 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Msx1P13297 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Msx1P13297 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Msx1P13297 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Msx1P13297 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Msx1P13297 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Msx1P13297 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC13.02□□□□□ -0.32
Msx1P13297 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
Msx1P13297 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.02□□□□□ -0.33
Msx1P13297 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC13.02□□□□□ -0.33
Msx1P13297 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
Msx1P13297 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC13.02□□□□□ -0.33
Msx1P13297 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC13.02□□□□□ -0.33
Msx1P13297 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC13.02□□□□□ -0.33
Msx1P13297 Gm43974-201ENSMUST00000205080 684 ntBASIC13.02□□□□□ -0.33
Msx1P13297 Gm44799-201ENSMUST00000207639 1202 ntBASIC13.02□□□□□ -0.33
Msx1P13297 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Msx1P13297 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Gm9200-201ENSMUST00000118513 1354 ntBASIC13.02□□□□□ -0.33
Msx1P13297 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Msx1P13297 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Msx1P13297 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Msx1P13297 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC13.02□□□□□ -0.33
Msx1P13297 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msx1P13297 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC13.01□□□□□ -0.33
Msx1P13297 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Msx1P13297 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Msx1P13297 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Msx1P13297 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Msx1P13297 Gm12467-201ENSMUST00000117625 745 ntBASIC13.01□□□□□ -0.33
Msx1P13297 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC13.01□□□□□ -0.33
Msx1P13297 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Fam240b-201ENSMUST00000180282 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Gm7558-201ENSMUST00000193221 1165 ntBASIC13.01□□□□□ -0.33
Msx1P13297 Gm36982-201ENSMUST00000193796 1128 ntBASIC13.01□□□□□ -0.33
Msx1P13297 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Msx1P13297 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC13.01□□□□□ -0.33
Msx1P13297 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC13.01□□□□□ -0.33
Msx1P13297 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msx1P13297 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 65.9 ms