Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.62□□□□□ -0.39
Cops4O88544 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Gm45706-201ENSMUST00000213063 2136 ntBASIC12.62□□□□□ -0.39
Cops4O88544 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cops4O88544 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Cops4O88544 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Cops4O88544 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Cops4O88544 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Gm13730-201ENSMUST00000121036 1462 ntBASIC12.61□□□□□ -0.39
Cops4O88544 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC12.61□□□□□ -0.39
Cops4O88544 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Rpph1-201ENSMUST00000175096 319 ntBASIC12.61□□□□□ -0.39
Cops4O88544 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC12.61□□□□□ -0.39
Cops4O88544 Gm45683-201ENSMUST00000210825 1247 ntBASIC12.61□□□□□ -0.39
Cops4O88544 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Cops4O88544 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
Cops4O88544 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.61□□□□□ -0.39
Cops4O88544 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Gm7114-201ENSMUST00000190159 1789 ntBASIC12.61□□□□□ -0.39
Cops4O88544 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cops4O88544 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Gm5939-201ENSMUST00000119613 2874 ntBASIC12.6□□□□□ -0.39
Cops4O88544 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.6□□□□□ -0.39
Cops4O88544 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC12.6□□□□□ -0.39
Cops4O88544 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
Cops4O88544 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Cops4O88544 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Cops4O88544 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC12.6□□□□□ -0.39
Cops4O88544 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC12.6□□□□□ -0.39
Cops4O88544 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC12.6□□□□□ -0.39
Cops4O88544 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC12.6□□□□□ -0.39
Cops4O88544 Bloc1s5-203ENSMUST00000224902 612 ntBASIC12.6□□□□□ -0.39
Cops4O88544 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Cops4O88544 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Cops4O88544 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Cops4O88544 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cops4O88544 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms