Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm8515-201ENSMUST00000194852 576 ntBASIC14.04□□□□□ -0.16
Vps28Q9D1C8 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Vps28Q9D1C8 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Matn2-206ENSMUST00000228570 2798 ntBASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gm11424-201ENSMUST00000121929 829 ntBASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gm12091-201ENSMUST00000146791 830 ntBASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gm18018-201ENSMUST00000198273 408 ntBASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gm6745-201ENSMUST00000199216 526 ntBASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gm45668-201ENSMUST00000211271 493 ntBASIC14.03□□□□□ -0.16
Vps28Q9D1C8 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 AC155286.1-201ENSMUST00000218632 448 ntBASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Vps28Q9D1C8 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps28Q9D1C8 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps28Q9D1C8 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps28Q9D1C8 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps28Q9D1C8 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Vps28Q9D1C8 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Vps28Q9D1C8 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps28Q9D1C8 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps28Q9D1C8 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Vps28Q9D1C8 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Vps28Q9D1C8 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Gm9794-201ENSMUST00000202370 423 ntBASIC14.02□□□□□ -0.17
Vps28Q9D1C8 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 AC140375.2-201ENSMUST00000225283 584 ntBASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Vps28Q9D1C8 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps28Q9D1C8 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC14.01□□□□□ -0.17
Vps28Q9D1C8 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Vps28Q9D1C8 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.01□□□□□ -0.17
Vps28Q9D1C8 Gm38037-201ENSMUST00000192600 1624 ntBASIC14.01□□□□□ -0.17
Vps28Q9D1C8 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms