Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Gm6263-201ENSMUST00000120029 1342 ntBASIC15.35■□□□□ 0.05
Smc1aQ9CU62 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 AC121801.1-201ENSMUST00000225363 1899 ntBASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC15.35■□□□□ 0.05
Smc1aQ9CU62 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Gm13464-201ENSMUST00000119418 935 ntBASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Ighv5-13-201ENSMUST00000193550 290 ntBASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Gm18187-201ENSMUST00000196476 984 ntBASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Gm43703-201ENSMUST00000200523 763 ntBASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
Smc1aQ9CU62 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Smc1aQ9CU62 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Smc1aQ9CU62 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Smc1aQ9CU62 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Smc1aQ9CU62 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Mmp14-206ENSMUST00000225641 3238 ntBASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Gm27631-201ENSMUST00000184163 466 ntBASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Gm8515-201ENSMUST00000194852 576 ntBASIC15.33■□□□□ 0.04
Smc1aQ9CU62 AC132467.2-202ENSMUST00000227726 559 ntBASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Smc1aQ9CU62 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms