Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC11.33□□□□□ -0.6
Hmgb3O54879 Gm13294-201ENSMUST00000121757 1330 ntBASIC11.33□□□□□ -0.6
Hmgb3O54879 Gm5366-201ENSMUST00000215494 1338 ntBASIC11.33□□□□□ -0.6
Hmgb3O54879 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Hmgb3O54879 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Hmgb3O54879 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Gcc2-201ENSMUST00000057659 6547 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Ankrd11-201ENSMUST00000098333 7995 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Gm11764-201ENSMUST00000120221 623 ntBASIC11.32□□□□□ -0.6
Hmgb3O54879 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Gm6550-201ENSMUST00000187574 993 ntBASIC11.32□□□□□ -0.6
Hmgb3O54879 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Gm45098-201ENSMUST00000207179 657 ntBASIC11.32□□□□□ -0.6
Hmgb3O54879 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 AC139054.1-201ENSMUST00000226898 1598 ntBASIC11.32□□□□□ -0.6
Hmgb3O54879 Nudt18-203ENSMUST00000228768 1578 ntBASIC11.32□□□□□ -0.6
Hmgb3O54879 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Hmgb3O54879 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Hmgb3O54879 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Itga11-201ENSMUST00000034774 4969 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Hmgb3O54879 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC11.31□□□□□ -0.6
Hmgb3O54879 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC11.31□□□□□ -0.6
Hmgb3O54879 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Hmgb3O54879 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
Hmgb3O54879 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC11.31□□□□□ -0.6
Hmgb3O54879 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC11.31□□□□□ -0.6
Hmgb3O54879 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC11.31□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 114.4 ms