Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Gm45242-201ENSMUST00000210666 2129 ntBASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Gm27397-201ENSMUST00000184997 107 ntBASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Ighv8-7-201ENSMUST00000194349 297 ntBASIC13.55□□□□□ -0.24
Lima1Q9ERG0 AC132104.2-201ENSMUST00000215011 266 ntBASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Lima1Q9ERG0 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Lima1Q9ERG0 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms