Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 CT009713.10-201ENSMUST00000225013 1986 ntBASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Gm15573-201ENSMUST00000119487 540 ntBASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Mir6998-201ENSMUST00000183343 64 ntBASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Mir7076-201ENSMUST00000183519 74 ntBASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Gm43692-201ENSMUST00000198236 1062 ntBASIC18.21■□□□□ 0.51
Scn4aQ9ER60 AC154290.1-201ENSMUST00000223786 1240 ntBASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Mir483-201ENSMUST00000093631 73 ntBASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
Scn4aQ9ER60 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Scn4aQ9ER60 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Scn4aQ9ER60 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Scn4aQ9ER60 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 AC122197.2-201ENSMUST00000219196 1635 ntBASIC18.2■□□□□ 0.5
Scn4aQ9ER60 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Gm9111-201ENSMUST00000219394 709 ntBASIC18.2■□□□□ 0.5
Scn4aQ9ER60 AC126799.1-201ENSMUST00000221976 246 ntBASIC18.2■□□□□ 0.5
Scn4aQ9ER60 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Scn4aQ9ER60 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC18.19■□□□□ 0.5
Scn4aQ9ER60 H2-Q3-201ENSMUST00000172583 608 ntBASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Aprt-ps-201ENSMUST00000212311 505 ntBASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Gm39404-201ENSMUST00000216350 313 ntBASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Mir671-201ENSMUST00000102432 98 ntBASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Gm38297-201ENSMUST00000195122 1057 ntBASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Scn4aQ9ER60 Gm5525-201ENSMUST00000190438 1312 ntBASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Gm7899-201ENSMUST00000192935 1897 ntBASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Gm27530-201ENSMUST00000184096 98 ntBASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Gm37246-201ENSMUST00000192665 835 ntBASIC18.18■□□□□ 0.5
Scn4aQ9ER60 AY036118-201ENSMUST00000200021 923 ntBASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Gm18974-201ENSMUST00000221478 1031 ntBASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 AC166344.1-202ENSMUST00000224139 234 ntBASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Prrxl1-205ENSMUST00000228878 723 ntBASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC18.18■□□□□ 0.5
Scn4aQ9ER60 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 65.4 ms