Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Mir7221-201ENSMUST00000184009 72 ntBASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Mir6420-201ENSMUST00000185032 102 ntBASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 AC154276.1-201ENSMUST00000228874 1299 ntBASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf1Q9EPU4 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Gm40466-201ENSMUST00000212174 422 ntBASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Gm28386-201ENSMUST00000189147 1849 ntBASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf1Q9EPU4 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Gm15198-201ENSMUST00000117283 177 ntBASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Gm16372-201ENSMUST00000073088 450 ntBASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Gm4782-201ENSMUST00000168705 2046 ntBASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf1Q9EPU4 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Gm22018-201ENSMUST00000104357 131 ntBASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Gm28693-202ENSMUST00000190758 331 ntBASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Gm43818-201ENSMUST00000200605 466 ntBASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Gm43134-201ENSMUST00000199434 1886 ntBASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf1Q9EPU4 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC18.66■□□□□ 0.58
Cpsf1Q9EPU4 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms