Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Gm22018-201ENSMUST00000104357 131 ntBASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Gm38002-201ENSMUST00000193255 180 ntBASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Gm7172-201ENSMUST00000218047 1152 ntBASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Gm2824-203ENSMUST00000226189 1228 ntBASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Gm9823-201ENSMUST00000051212 327 ntBASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
Upf3aQ3ULJ3 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Gm13886-201ENSMUST00000117876 1183 ntBASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Gm37497-201ENSMUST00000195830 798 ntBASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Gm17823-201ENSMUST00000217830 1006 ntBASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Upf3aQ3ULJ3 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Gm12020-201ENSMUST00000119030 2042 ntBASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Gm26927-201ENSMUST00000182385 965 ntBASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Snora73a-201ENSMUST00000082453 205 ntBASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Gm20632-201ENSMUST00000176760 2427 ntBASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3aQ3ULJ3 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 77.6 ms